Bruce - before you go to all that work rebuilding the data, I'd suggest having your Adagio Consultant take a look at this for you.
I haven't seen this problem in particular, but have seen many odd things with specification/template files that had nothing to do with corrupted data. I'd hate for you to do all that work when another option may be available.
If your consultant isn't able to assist, give us a call.
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Ryan Brohman
Kitchener, ON