Thank you Dan and Doug,

They won't be able to match on Check number in the reconciliation but perhaps date and Total amount will be enough.

They could have a BankRec Bank account for the EFT payments that is set to use Auto-Transfers.

As long as the Payables Batches are retrieved into BankRec between EFT runs, the Auto-Transfer amounts will match the Total amount for the EFT run.