Hello Brian,
SalesAnalysis makes no guarantees that its figures will tie to the general ledger. From the SalesAnalysis manual under
Database Editing:
The database maintained by SalesAnalysis is purely statistical in nature. SalesAnalysis generates no accounting entries.
Users can edit any figures in the SA database without using GV-RW. The dates may have been changed there.
I would be VERY surprised if running the Set Paid Indicator function was changing the Invoice date in any circumstances (although bugs are a fact of life), but perhaps there is a very specific sequence that makes this happen. Or perhaps someone just changed the date in the SA database using
Edit | Sales data.