Hi Carol,
I asked around, and apparently one other site experienced something similar, and it had to do with a flag for only selecting EFT transactions being enabled on the System Check Run screen but hidden because EFT was not enabled in the Company Profile.
If this is the same thing for your client, the way to check this out is to edit the Payables company profile and temporarily enabled Allow EFT. Then edit the System Check Run to see if the option is now visible. If so then turn it off.
Before disabling EFT in the Company Profile, also edit the Banks to make sure nothing got configured there to assign anything related to EFT. In the other site, they had EFT Processing methods set on the banks that needed to be disabled. When everything is cleared out related to EFT, you can edit the company profile and turn EFT off.
If it turns out that this happens to be the solution, and if they have a data backup prior to converting to AP93B, see if you can replicate the conversion issue in your office. It may be that there are pre-93B data conditions that is affecting the conversion, and something in this area for us to fix.
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Regards,
Softrak Tech Support