Hi Sammy,
Did you save copies of your specifications that you used to print invoices and credit notes before July 1 when HST was introduced? Or did you update those specs to include HST text and fields, overwriting what you had? I believe Doug was suggesting that you use the old specs, presuming you still have them.
If you see the correct GST and PST amounts on your credit note, on the Totals tab, then there is no problem with how the tax was calculated. You need to have the different tax jurisdiction fields on your credit note spec, either in the footer or in the detail section (if you choose to print tax as details).
If you don't have those old spec files, perhaps you could find a backup of your data prior to July 1 and look for the OE$ prefixed data files and perhaps you could grab your old credit note spec for this.
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Regards,
Softrak Tech Support