Hello S.A.,
First, use Edit | Departments to add the missing department numbers and their descriptions into the table.
Then, run the Data Integrity Check and make sure the problems have gone away. The Data Integrity Check will list each department number that is missing from the table.
In ACCPAC Plus, department descriptions were optional. In Adagio, you can have the same behaviour by turning off the "Report missing departments" option in the COmpany profile.
None of this will affect the closing of your accounts at year end.
If you updated to V9.0A of the General Ledger, your year end would be much simpler.
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Andrew Bates