When it comes to deposits you can reverse the deposit in BankRec Balance Reconciliation (which does not update AR) or you can NSF the individual receipts in BankRec Balance View (which will update AR).

Without seeing the data my guess is that the transactions in AR are okay and all you have to do is re-enter the deposit correctly.
_________________________
Douglas Dickie
AccSys Solutions Inc
Phone: 1.888.534.4344
ddickie@accsyssolutions.com