Hello kbs,
If you are trying to reallocate entries on a recurring percentage basis between departments, the Adagio allows you to create a reallocation batch that will move the amount automatically. Check out account reallocation in the help text or manual.
If you are just trying to move specific amounts between specific departments on an "ad hoc" basis, then you'll have to create journal entries to move the amounts. I don't know of any facility for Adagio that duplicates that specific Toolkit functionality.
_________________________
Andrew Bates